| Act 58 | To Kyoto... (Beginning) |
| Act 59 | To Kyoto... (End) |
| Act 60 | Megumi's Feelings, Kaoru's Feelings |
| Act 61 | A Cold-Hearted Man |
| Act 62 | On the Meiji Toukai Way |
| Act 63 | Machimaki Misao |
| Act 64 | Playing Tag |
| Act 65 | Each on their Way |
| Act 66 | An Abandoned Village |
- Begins: Sanosuke really pissed off at Kenshin for having left without telling him
- Ends: Kenshin and Misao at Shingetsu, a village taken over by Shishio, Meeting Saitou there
- Important Happenings:
- The Kenshin gumi decide to go after Kenshin to Kyoto
- Return of Aoshi, joining Shishio temporarily so that he can find Kenshin
- Kenshin meets Misao
- Misao and Kenshin find Eiji, go to Eiji's village which has been taken by Shishio