| Season One | 22 color episodes in 60 minute format | ||
|---|---|---|---|
| Ep | PN | Airdate | Title |
| 1 | 105 | Sep 27/01 | Viva Fidel |
| 2 | 104 | Oct 04/01 | God's Work |
| 3 | 102 | Oct 18/01 | The Year of Lying Dangerously |
| 4 | 106 | Oct 25/01 | In Our Own Backyard |
| 5 | 100 | Nov 01/01 | Pilot |
| 6 | 103 | Nov 08/01 | A Slight Case of Anthrax |
| 7 | 107 | Nov 15/01 | Closure |
| 8 | 108 | Nov 29/01 | Nocturne |
| 9 | 109 | Dec 06/01 | Rules of the Game |
| 10 | 101 | Dec 20/01 | Deadline |
| 11 | 110 | Jan 17/02 | Son Set |
| 12 | 111 | Jan 24/02 | The Enemy Within |
| 13 | 112 | Jan 31/02 | The Golden Hour |
| 14 | 113 | Feb 07/02 | The Gauntlet |
| 15 | 114 | Feb 28/02 | Sleeping Dogs Lie |
| 16 | 115 | Mar 07/02 | The Plague Year |
| 17 | 116 | Mar 28/02 | Moo |
| 18 | 117 | Apr 04/02 | The Greater Good |
| 19 | 119 | Apr 18/02 | Peacemakers |
| 20 | 118 | Apr 25/02 | The Understudy |
| - | Apr 27/02 | Shell Game (Part 1) (The District episode) | |
| 21 | 120 | May 02/02 | Doublecrossover (Part 2) (The District crossover) |
| 22 | 121 | May 09/02 | Finale |
| Season Two | 22 color episodes in 60 minute format | ||
|---|---|---|---|
| Ep | PN | Airdate | Title |
| 23 | 202 | Sep 28/02 | French Kiss |
| 24 | 203 | Oct 05/02 | Air Lex |
| 25 | 201 | Oct 12/02 | The Great Game |
| 26 | 204 | Oct 19/02 | C.S.Lie |
| 27 | 206 | Oct 26/02 | The Prisoner |
| 28 | 205 | Nov 02/02 | Home Grown |
| 29 | 207 | Nov 09/02 | Heartless |
| 30 | 208 | Nov 16/02 | First Born |
| 31 | 209 | Nov 23/02 | Thanksgiving |
| 32 | 210 | Dec 06/02 | Trust |
| 33 | 211 | Dec 14/02 | Elite Meat to Eat |
| 34 | 212 | Jan 18/03 | An Isolated Incident |
| 35 | 213 | Feb 01/03 | Debbie Does Djakarta |
| 36 | 214 | Feb 08/03 | Coventry |
| 37 | 216 | Feb 15/03 | Absolute Bastard |
| 38 | 217 | Feb 22/03 | Unholy Alliances |
| 39 | 215 | Mar 15/03 | Soft Kills |
| 40 | 219 | Apr 12/03 | Spy Finance |
| 41 | 220 | Apr 26/03 | War, Inc. |
| 42 | 218 | May 03/03 | Mi Cena Con Andrei |
| 43 | 221 | May 10/03 | Our Man in Korea (Part 1) |
| 44 | 222 | May 17/03 | Our Man in Washington (Part 2) |
