Here is a list of high voltage transformers and where to get them.

Ignition coils- This should be obvious. See automobiles.
Oil burner ignitors- These are available very cheaply (used) at a local HVAC dealer.
Neon sign transformers- Available from demolition companies and neon sign shops. Ask for a used                                       unit. These are often repairable by removing the tar by freezing them and                                       then chipping the tar off the windings.
Flyback transformers- These can be had from TVs and monitors that are left out for trash pickup,                                   or in you local TV repair shops dumpster, or maybe you can even get brave                                   and ask them for one.
Microwave oven transformers- See flyback transformers for places to obtain them.
Xenon transformers- These are very rare. They can be found in some laser applications. They are                                 current limited like microwave oven, oil burner, and neon sign transformers,                                 but have lower output current typically.
Medical/dental x-ray transformer- These are very powerful transformers. A typical voltage output of                                                     just one of these is around 60-200kV at 50-120mA. These look                                                     like they are very hard to obtain.
Power distribution transformers- These can be obtained from the power company. They are very                                                   powerful. There are several different types. Voltage outputs may                                                   range from 7.5kV to 20kV at around 500mA to 1A typically. This                                                   transformer is the "metal can" or "pole pig" which hangs on the                                                   power pole. They must be wired in reverse for step-up operation                                                   and be externally ballasted. If they are not externally ballasted you                                                   will probably cause a brown-out. A good current limiter is an arc                                                   welder or a tub of water doped with baking soda in series with                                                   one of the primary inputs.
Vacuum tube plate transformers- These are used in high power RF amplifiers. Typically 1.5kV to                                                   3kV (of course many are below this). Look at a hamfest for them.

Of course you can always wind your own high voltage transformer if you have enough knowledge of transformer construction. Just break the core apart and wind a new secondary winding in reference to the primary turns-per-volt ratio. Magnetic shunts are also always a good idea.

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