AP Biology
Notes:  Photosynthesis
Photosynthesis:     Transforms solar light energy trapped by chloroplasts into chemical 
                              bond energy stored in sugar and other organic molecules.  
            This process:  
               * Synthesizes energy-rich organic molecules from the energy-poor molecules 
               * CO2 and H2O
               * Uses CO2 as a carbon source and light energy as the energy source
               * Directly or indirectly supplies energy to most living organisms

Autotrophic nutrition: (Auto = self, trophos = feeds) Nutritional mode of synthesizing 
                                    organic molecules form inorganic raw materials
        Examples of autotrophic organisms are plants, which require only CO2 ,H2O, and
         minerals as nutrients. Because autotrophic organisms produce organic molecules that
        enter an ecosystem's  food store, autotrophs are also known as producers.

         Photoautotrophs : Autotrophic organisms that use light as an energy 
                                      source to synthesize organic molecules.  Examples are 
                                      photosynthetic organisms such as plants, algae, and 
                                      some prokaryotes.
         Chemoautotrophs: Autotrophic organisms that use the oxidation of inorganic 
                                       substances, such as sulfur or ammonia, as an energy source
                                       to synthesize organic molecules.  Unique to some bacteria, 
                                       this is rare form of autotrophic nutrition.

Heterotrophic nutrition: (Heteros = other; trophos = feed)  nutritional mode of acquiring 
                                        organic molecules form compounds produced by other organisms.  
        *  Heterotrophs are unable to synthesize organic molecules from inorganic raw materials.
        *  Heterotrophs are also known as consumers
   
     *  Examples are animals that eat plants or other animals
        *  Decomposers, hetrotrophs that decompose and feed on organic litter.  
        *  Most hetrotrophs depend on photoautotrophs for food and oxygen 

Chloroplasts:  (sites of photosynthesis in plants)
       
Although all green plant parts have chloroplasts, leaves are the major sites of 
        photosynthesis in most plants.  Chlorophyll is the green pigment in chloroplasts 
        that gives a leaf its color and that absorbs the light energy used to drive photosynthesis

                   

        *Chloroplast are primarily in cells of mesophyll, green tissue in the leaf's interior
        *CO2 and O2exits the leaf through microscopic pores called stomata
        *
Water absorbed by the roots is transported to leaves through veins or vascular 
            bundles
which also export sugar from leaves to nonphotosynthetic parts of the plant.

1.  Intermembrane space
         The chloroplast is obtund by a double 
         membrane which partitions its contents from 
         the cytosol.  A narrow intermembrane space
        
separates the two membranes.
2.  Thylakoid space
      Thylakoids form another membranous system 
      within the chloroplast.  The thylakoid
      membrane segregates the interior of the chloroplast
       into two compartments:   thylakoid space and stroma
3.  Stroma
     
Reactions that use chemical energy to convert carbon
     dioxide to sugar occur in the stroma, viscous fluid 
     outside the thylakoids.

 

The nature of sunlight:
   
     Sunlight is electromagnetic energy.  The quantum mechanical model 
        of  electromagnetic radiation describes light as having a 
        behavior that  is both wavelike and particlelike.
           

 


Wavelike properties of light:
        Electromagentic energy  is a form of energy that travels in rhythmic waves 
        which are disturbances of electric magnetic fields.
        Visible light, which is detectable by the human eye, is only a small portion of 
         the electromagnetic spectrum and ranges from about 380 to 750 nm.  The 
         wavelengths most important for photosynthesis are within the range of visible 
         light.

 Particle like properties of light:
        Light also behaves as if it consist of discrete particles or quanta called photons
       
Each photon has a fixed quantity of energy which is inversely proportional to 
        the wavelength of light.

Photosynthetic pigments: ( light receptors)
    Pigments:  Substances which absorb visible light
        *  Different pigments absorb different wavelengths of light
        *  Wavelengths that are absorbed disappear, so a pigment that absorbs 
            all wavelengths appears black.
        *  When white light, which contains all the wavelengths of visible light, illuminates a 
            pigment, the color you see is the color most reflected or transmitted by the pigment.  
            For example, a leaf appears green because chlorophyll absorbs red and blue light but
            transmits and reflects green light.
        *  Each pigment has a characteristic absorption spectrum or pattern of wavelengths that 
            is absorbs.  It is expressed as a graph of absorption versus wavelength.
            The absorption spectrum for a pigment in solution can be determined by using a 
            spectrophotometer
,
       *   Since chlorophyll a is the light absorbing pigment that participates directly in the 
           light reactions, the absorption spectrum of chlorophyll a provides clues as to which 
           wavelengths of visible light are most effective for photosynthesis
       *  A graph of wavelengths versus rate of photosynthesis is called an action spectrum 
           and profiles the relative effectiveness of different wavelengths of visible light for driving 
           photosynthesis.  

                                               
The accessory pigments expand the range of wavelengths available for photosynthesis.  
These pigments include:
                                                        
        Chlorophyll b, a yellow-green pigment with a structure similar to chlorophyll a.  
        This minor structural differences gives the pigments slightly different absorption spectra.
        Carotenoids, yellow and orange hydrocarbons that are built into the thylakoid 
        membrane with the two types of chlorophyll.
                                                 

Photoexcitation of chlorophyll
Colors absorbed wavelengths disappear from the spectrum of transmitted and reflected light
The absorbed photon boosts one of the pigment of molecule's electrons in its lowest-
energy state (ground state) to an orbital of higher energy (excited state).  

Light-harvesting complexes of the thylakoid membrane:
                                   

Antenna complex

        Several hundred chlorophyll a , chlorophyll b and carotenoid molecules are light-
        gathering antennae that absorb photons and pass the energy from molecule to 
        molecule.  This process of resonance energy transfer is called inductive resonance
   
     Different pigments within the antennal complex have slightly different absorption 
        spectra, so collectively they can absorb photons from a wider range of the light 
        spectrum than would be possible with only one type of pigment molecule.
Reaction-center chlorophyll
        Only one of the many chlorophyll a molecules in each complex can actually transfer 
        an excited electron to  initiate the light reactions.  This specialized chlorophyll a is 
        located in the reaction center
Primary electro acceptor.
        Located near the reaction center, a primary electron acceptor molecule traps excited 
        state electrons released form the reaction center chlorophyll.
        The transfer of excited state electrons from chlorophyll to primary electron acceptor 
        molecules is the first step of the light reactions.  The energy stored in the trapped 
        electrons powers the synthesis of ATP and NADPH in the subsequent steps.