| ROUND | PICK | TEAM | SELECTION |
| 1 | 1 | Virginia Colonials | 7 Griffey, Ken CIN |
| 1 | 2 | Homers | 7 Green, Shawn LA |
| 1 | 3 | Troy | 3 Zeile, Todd NY |
| 1 | 4 | Zenators | 7 Edmonds, Jim STL |
| 1 | 5 | Mao Maos | 7 Goodwin, Tom COL |
| 1 | 6 | Infallibles | 1 Jackson, Mike PHI |
| 1 | 7 | New World Order | 1 Harnisch, Pete CIN |
| 1 | 8 | White Breads | 1 Vazquez, Javier MON |
| 1 | 9 | Moral Equivalents | 7 Benard, Marvin SF |
| 1 | 10 | Dire Trades | 1 Aguilera, Rick CHI |
| 2 | 11 | Virginia Colonials | 5 Williams, Matt ARZ |
| 2 | 12 | Homers | 1 Penny, Brad FLA |
| 2 | 13 | Troy | 1 Williams, Mike PIT |
| 2 | 14 | Zenators | 1 Kile, Darryl STL |
| 2 | 15 | Mao Maos | 1 Nathan, Joe SF |
| 2 | 16 | Infallibles | 1 Schmidt, Jason PIT |
| 2 | 17 | New World Order | 1 Benes, Andy STL |
| 2 | 18 | White Breads | 1 Cordova, Francisco PIT |
| 2 | 19 | Moral Equivalents | 3 Klesko, Ryan SD |
| 2 | 20 | Dire Trades | 1 Pavano, Carl MON |
| 3 | 21 | Virginia Colonials | 1 Ritchie, Todd PIT |
| 3 | 22 | Homers | 5 Caminiti, Ken HOU |
| 3 | 23 | Troy | 7 Henderson, Rickey NY |
| 3 | 24 | Zenators | 3 Stevens, Lee MON |
| 3 | 25 | Mao Maos | 6 Aurilia, Rich SF |
| 3 | 26 | Infallibles | 1 Valdes, Ismael CHI |
| 3 | 27 | New World Order | 1 Jones, Bobby NY (RH) |
| 3 | 28 | White Breads | 1 Lieber, Jon CHI |
| 3 | 29 | Moral Equivalents | 1 Hitchcock, Sterling SD |
| 3 | 30 | Dire Trades | 6 Furcal Rafael ATL |
| 4 | 31 | Virginia Colonials | 2 Taubensee, Ed CIN |
| 4 | 32 | Homers | 1 Parris, Steve CIN |
| 4 | 33 | Troy | 1 Byrd, Paul PHI |
| 4 | 34 | Zenators | 4 Veras, Quilvio ATL |
| 4 | 35 | Mao Maos | 3 Barker, Kevin MIL |
| 4 | 36 | Infallibles | 6 Loretta, Mark MIL |
| 4 | 37 | New World Order | 7 Cordero, Wil PIT |
| 4 | 38 | White Breads | 4 Vidro, Jose MON |
| 4 | 39 | Moral Equivalents | 6 Jackson, Damian SD |
| 4 | 40 | Dire Trades | 3 Snow, J.T. SF |
| 5 | 41 | Virginia Colonials | 1 Anderson,Brian ARZ |
| 5 | 42 | Homers | 1 Villone, Ron CIN |
| 5 | 43 | Troy | 1 Williams, Woody SD |
| 5 | 44 | Zenators | 1 Lee, David COL |
| 5 | 45 | Mao Maos | 1 Dempster, Ryan FLA |
| 5 | 46 | Infallibles | 7 Gant, Ron PHI |
| 5 | 47 | New World Order | 1 Nunez, Vladimir FLA |
| 5 | 48 | Zenators (White Breads) | 4 Vina, Fernando STL |
| 5 | 49 | Moral Equivalents | 7 Martin, Al SD |
| 5 | 50 | Dire Trades | 1 Wolf, Randy PHI |
| 6 | 51 | Virginia Colonials | 6 Gonzalez, Alex FLA |
| 6 | 52 | Homers | 2 Widger, Chris MON |
| 6 | 53 | Troy | 1 Irabu, Hidecki MON |
| 6 | 54 | Zenators | 2 Estalella, Bob SF |
| 6 | 55 | Mao Maos | 5 Hernandez, Jose MIL |
| 6 | 56 | Infallibles | 7 Owens, Eric SD |
| 6 | 57 | New World Order | 7 Buford, Damon CHI |
| 6 | 58 | Zenators (White Breads) | 1 Hernandez, Livan SF |
| 6 | 59 | Moral Equivalents | 7 Patterson, Corey CHI |
| 6 | 60 | Dire Trades | 1 Gomes, Wayne PHI |
| 7 | 61 | Virginia Colonials | 1 Hentgen, Pat STL |
| 7 | 62 | Homers | 6 Gutierrez, Ricky CHI |
| 7 | 63 | Troy | 2 Matheny, Mike STL |
| 7 | 64 | Zenators | 2 Petrick, Ben COL |
| 7 | 65 | Mao Maos | 1 Person, Robert PHI |
| 7 | 66 | Infallibles | 1 Woodard, Steve MIL |
| 7 | 67 | New World Order | 4 Grudzielanek, Mark LA |
| 7 | 68 | White Breads | 4 Lansing, Mike COL |
| 7 | 69 | Moral Equivalents | 1 Stephenson, Garrett PHI |
| 7 | 70 | Zenators (Dire Trades) | 7 Hollandsworth, Todd LA |
| 8 | 71 | Virginia Colonials | 7 Davis, Eric STL |
| 8 | 72 | Homers | 3 Lee, Derek FLA |
| 8 | 73 | Dire Trades (Troy) | 1 Bell, Rob CIN |
| 8 | 74 | Zenators | 2 Meluskey, Mitch HOU |
| 8 | 75 | Mao Maos | 1 Astacio, Pedro COL |
| 8 | 76 | Infallibles | 7 Kotsay, Mark FLA |
| 8 | 77 | New World Order | 1 Hershiser, Orel LA |
| 8 | 78 | White Breads | 1 Reynoso, Armando ARZ |
| 8 | 79 | Moral Equivalents | 1 Sanchez, Jesus FLA |
| 8 | 80 | Dire Trades | 7 Brown, Brant FLA |
| 9 | 81 | Dire Trades (VC) | 7 White, Devon LA |
| 9 | 82 | Homers | 1 DiPoto, Jerry COL |
| 9 | 83 | Troy | 5 Mueller, Bill SF |
| 9 | 84 | Zenators | 5 Andrews, Shane CHI |
| 9 | 85 | Mao Maos | 1 Kim, Byung-Hyun ARZ |
| 9 | 86 | Infallibles | 3 Millar, Kevin FLA |
| 9 | 87 | New World Order | 6 Meares, Pat PIT |
| 9 | 88 | White Breads | 1 Lightenburg, Kerry ATL |
| 9 | 89 | Moral Equivalents | 7 Payton, Jay NY |
| 9 | 90 | Dire Trades | 7 Hunter, Brian COL |
| 10 | 91 | Virginia Colonials | 1 Estes, Shawn SF |
| 10 | 92 | Homers | 1 Jimenez, Jose COL |
| 10 | 93 | Troy | 6 Ordonez, Rey NY |
| 10 | 94 | Zenators | 1 Silva, Jose PIT |
| 10 | 95 | Mao Maos | 1 Gagne, Eric LA |
| 10 | 96 | Infallibles | 1 Burnett, A.J. FLA |
| 10 | 97 | New World Order | 1 Meadows, Brian FLA |
| 10 | 98 | White Breads | 1 Farnsworth, Kyle CHI |
| 10 | 99 | Moral Equivalents | 1 Morris, Matt STL |
| 10 | 100 | Dire Trades | 2 Davis, Ben SD |
| 11 | 101 | Virginia Colonials | 1 Arrojo, Rolando COL |
| 11 | 102 | Homers | 1 Mahomes, Pat NY |
| 11 | 103 | Troy | 1 Rueter, Kirk SF |
| 11 | 104 | Zenators | 6 Cabrera, Orlando MON |
| 11 | 105 | Mao Maos | 6 Relaford, Desi PHI |
| 11 | 106 | Infallibles | 1 Boehringer, Brian SD |
| 11 | 107 | New World Order | 1 Haynes, Jimmy MIL |
| 11 | 108 | White Breads | 4 Shumpert, Terry COL |
| 11 | 109 | Moral Equivalents | 2 Mayne, Brent COL |
| 11 | 110 | Dire Trades | 7 Murray, Calvin SF |
| 12 | 111 | Virginia Colonials | 1 Hutchison, Chad STL |
| 12 | 112 | Homers | 4 Morandini, Mickey PHI |
| 12 | 113 | Troy | 7 Hamilton, Darryl NY |
| 12 | 114 | Zenators | 1 Leskanic, Curt MIL |
| 12 | 115 | Mao Maos | 2 Miller, Damon ARZ |
| 12 | 116 | Infallibles | 2 Marrero, Eli STL |
| 12 | 117 | New World Order | 1 Tapani, Kevin CHI |
| 12 | 118 | White Breads | 2 Perez, Eddie ATL |
| 12 | 119 | Moral Equivalents | 6 Dawkins, Travis CIN |
| 12 | 120 | Dire Trades | 7 Tucker, Michael CIN |
| 13 | 121 | Virginia Colonials | 6 Dunston, Shawon STL |
| 13 | 122 | Homers | 1 Armas, Tony MON |
| 13 | 123 | Troy | 3 Colbrunn, Greg ARZ |
| 13 | 124 | Zenators | 1 Thurman, Mike MON |
| 13 | 125 | Mao Maos | 1 Powell, Jeremy MON |
| 13 | 126 | Infallibles | 1 Yoshii,Masato COL |
| 13 | 127 | New World Order | 2 Stinnett, Kelly ARZ |
| 13 | 128 | White Breads | 1 Rivera, Luis ATL |
| 13 | 129 | Moral Equivalents | 6 Fox, Andy ARZ |
| 13 | 130 | Dire Trades | 1 Franco, John NY |
| 14 | 131 | Virginia Colonials | 2 Eusebio, Tony HOU |
| 14 | 132 | Homers | 1 Karl, Scott COL |
| 14 | 133 | Troy | 2 Servais, Scott COL |
| 14 | 134 | Zenators | 1 Anderson, Jimmy PIT |
| 14 | 135 | Mao Maos | 1 DeLosSantos, Valerio MIL |
| 14 | 136 | Infallibles | 2 Girardi, Joe CHI |
| 14 | 137 | New World Order | 1 Cook, Dennis NY |
| 14 | 138 | White Breads | 5 Klassen, Danny ARZ |
| 14 | 139 | Moral Equivalents | 1 Mullholland, Terry ATL |
| 14 | 140 | Dire Trades | 5 Davis, Russ SF |
| 15 | 141 | Virginia Colonials | 1 Brock, Chris PHI |
| 15 | 142 | Homers | 1 Bere, Jason MIL |
| 15 | 143 | Troy | 1 Wendall, Turk NY |
| 15 | 144 | Zenators | 1 Christiansen, Jason PIT |
| 15 | 145 | Mao Maos | 7 Aven, Bruce PIT |
| 15 | 146 | Infallibles | 7 Sanders, Deion CIN |
| 15 | 147 | New World Order | 1 Rusch, Glendon NY |
| 15 | 148 | White Breads | 5 Coquillette, Trace MON |
| 15 | 149 | Moral Equivalents | 7 Nunally, Jon NY |
| 15 | 150 | Dire Trades | 1 Gooden, Doc HOU |
| 16 | 151 | Virginia Colonials | 3 Paquette, Craig STL |
| 16 | 152 | Homers | 5 Greene, Willie CHI |
| 16 | 153 | Troy | 7 Agbayani, Benny NY |
| 16 | 154 | Zenators | 7 Mora, Melvin NY |
| 16 | 155 | Mao Maos | 7 Gilkey, Benard ARZ |
| 16 | 156 | Infallibles | 1 Benes, Alan STL |
| 16 | 157 | New World Order | 5 Harris, Lenny ARZ |
| 16 | 158 | White Breads | 1 Lorraine, Andrew CHI |
| 16 | 159 | Moral Equivalents | 4 Lockhart, Keith ATL |
| 16 | 160 | Dire Trades | 1 Johnstone, John SF |
| 17 | 161 | Virginia Colonials | 4 McEwing, Joe NY |
| 17 | 162 | Homers | 7 Bonilla, Bobby ATL |
| 17 | 163 | Troy | 1 Tavarez, Julian COL |
| 17 | 164 | Mao Maos | 4 Jordan, Kevin PHI |
| 17 | 165 | Infallibles | 1 Bohanen Brian COL |
| 17 | 166 | New World Order | 7 Hill, Glenallen CHI |
| 17 | 167 | White Breads | 4 Santangelo, F.P. LA |
| 17 | 168 | Moral Equivalents | 4 Anderson, Marlon PHI |
| 17 | 169 | Dire Trades | 2 Houston, Tyler MIL |
| 18 | 170 | Virginia Colonials | 1 Navarro, Jaime MIL |
| 18 | 171 | Homers | 1 Brantley, Jeff PHI |
| 18 | 172 | Troy | 7 Bradley, Milton MON |
| 18 | 173 | Mao Maos | 3 Berry, Sean MIL |
| 18 | 174 | Infallibles | 6 Elster, Kevin LA |
| 18 | 175 | New World Order | 2 Reed, Jeff CHI |
| 18 | 176 | White Breads | 7 Guerrero, Wilton MON |
| 18 | 177 | Moral Equivalents | 2 LaRue, Jason CIN |
| 19 | 178 | Virginia Colonials | 1 Seanez, Rudy ATL |
| 19 | 179 | Homers | 2 Pena, Angel LA |
| 19 | 180 | Troy | 1 Jones, Bobby NY (LH) |
| 19 | 181 | Mao Maos | 2 Redmond, Mike FLA |
| 19 | 182 | Infallibles | 1 Remlinger, Mike ATL |
| 19 | 183 | New World Order | 3 Sprague, Ed SD |
| 19 | 184 | White Breads | 1 McGlintchy, Kevin ATL |
| Comp | 185 | White Breads | 3 Morris, Hal CIN |
| Comp | 186 | Dire Trades | 7 Barker, Glen HOU |
| Comp | 187 | White Breads | 7 Rios, Armando SF |
| Comp | 188 | Virginia Colonials | 2 Mirabelli, Doug SF |
| Comp | 189 | Troy | 6 Weiss, Walt ATL |
| Comp | 190 | Moral Equivalents | 2 Blanco, Henry MIL |
| Waiver-Wire Rounds | |||
| ROUND | PICK | TEAM | SELECTION |
| 20 | 191 | Virginia Colonials | 4 Polonco, Placido STL |
| 20 | 192 | Homers | 1 Miceli, Dan FLA |
| 20 | 193 | Troy | 2 Pratt, Todd NY |
| 20 | 194 | Zenators | 3 Hayes, Charlie MIL |
| 20 | 195 | Mao Maos | 5 Spiers, Bill HOU |
| 20 | 196 | Infallibles | 3 Joyner, Wally ATL |
| 20 | 197 | New World Order | 1 Gardner, Mark SF |
| 20 | 198 | White Breads | 1 Aybar, Manny CIN |
| 20 | 199 | Moral Equivalents | 6 Bogar, Tim HOU |
| 20 | 200 | Dire Trades | 5 Magadan, Dave SD |
| 21 | 201 | Virginia Colonials | 6 Vizcaino, Jose LA |
| 21 | 202 | Homers | 3 Zuleta, Julio CHI |
| 21 | 203 | Troy | 1 Bump, Nate FLA |
| 21 | 204 | Zenators | 1 Adams, Terry LA |
| 21 | 205 | Mao Maos | 7 Sefcik, Kevin PHI |
| 21 | 206 | Infallibles | 7 Angel Echevarria COL |
| 21 | 207 | New World Order | 2 Martinez, Sandy FLA |
| 21 | 208 | White Breads | 2 Santiago, Benito CIN |
| 21 | 209 | Moral Equivalents | 4 Abbott, Kurt NY |
| 21 | 210 | Dire Trades | 1 Orosco, Jesse STL |