| ROUND | PICK | TEAM | SELECTION |
| 1 | 1 | Virginia Colonials | 3 Sexson, Richie MIL |
| 1 | 2 | Infallibles | 7 Surhoff, B.J. ATL |
| 1 | 3 | Troy | 6 Bordick, Mike NY |
| 1 | 4 | Moral Equivalents | 7 Trammell, Bubba NY |
| 1 | 5 | Dire Trades | 3 Cabrera, Alex ARZ |
| 1 | 6 | White Breads | 7 Darr, Mike SD |
| 1 | 7 | Homers | 1 Bottenfield, Kent PHI |
| 1 | 8 | New World Order | 4 Frye, Jeff COL |
| 1 | 9 | Mao Maos | 1 Miller, Wade HOU |
| 1 | 10 | Zenators | 6 Blum, Geoff MON |
| 2 | 11 | Virginia Colonials | 4 Walker, Todd COL |
| 2 | 12 | Infallibles | 1 Dessens, Elmer CIN |
| 2 | 13 | Troy | 1 Arroyo, Bronson PIT |
| 2 | 14 | Moral Equivalents | 7 Ramirez, Alex PIT |
| 2 | 15 | Dire Trades | 3 Clark, Will STL |
| 2 | 16 | White Breads | 2 Castro, Ramon FLA |
| 2 | 17 | Homers | 5 Stynes, Chris CIN |
| 2 | 18 | New World Order | 1 Tolberg, Brian SD |
| 2 | 19 | Mao Maos | 1 Guzman, Geraldo ARZ |
| 2 | 20 | Zenators | 7 Brown, Emil PIT |
| 3 | 21 | Virginia Colonials | 1 Sheets, Ben MIL |
| 3 | 22 | Infallibles | 1 Quevedo, Ruben CHI |
| 3 | 23 | Troy | 1 Politte, Cliff PHI |
| 3 | 24 | Moral Equivalents | 4 Wilson, Enrique PIT |
| 3 | 25 | Dire Trades | 1 Padilla, Vincente PHI |
| 3 | 26 | White Breads | 7 Conti, Jason ARZ |
| 3 | 27 | Homers | 1 Rose, Brian COL |
| 3 | 28 | New World Order | 6 Cora, Alex LA |
| 3 | 29 | Mao Maos | 3 Seguignol, Fernando MON |
| 3 | 30 | Virginia Colonials (Zens) | 1 Timlin, Mike STL |
| 4 | 31 | Virginia Colonials | 1 Figeroa, Nelson ARZ |
| 4 | 32 | Infallibles | 1 Strickland, Scott MON |
| 4 | 33 | Troy | 1 Masaoka, Onan LA |
| 4 | 34 | Moral Equivalents | 7 Escobar, Alex NY |
| 4 | 35 | Dire Trades | 1 White, Gabe COL |
| 4 | 36 | White Breads | 1 Wohlers, Mark CIN |
| 4 | 37 | Homers | 1 Yarnell, Ed CIN |
| 4 | 38 | New World Order | 2 Leyritz, Jim LA |
| 4 | 39 | Zenators (Mao Maos) | 7 Huskey, Butch COL |
| 4 | 40 | Zenators | 1 Ford, Ben CHI |
| 5 | 41 | Virginia Colonials | 1 Rain, Steve CHI |
| 5 | 42 | Infallibles | 1 Sullivan, Scott CIN |
| 5 | 43 | Troy | 1 Slocumb, Heathcliff SD |
| 5 | 44 | Moral Equivalents | 1 Rigdon, Paul MIL |
| 5 | 45 | Dire Trades | 1 Green, Jason HOU |
| 5 | 46 | White Breads | 1 Witasick, Jay SD |
| 5 | 47 | Homers | 1 Henry, Doug SF |
| 5 | 48 | New World Order | 1 Morgan, Mike ARZ |
| 5 | 49 | Mao Maos | 5 Henson, Drew CIN |
| 5 | 50 | Zenators |
7 DeHaan, Kory SD |