| ROUND | PICK | TEAM | SELECTION |
| 1 | 1 | Virginia Colonials | 4 Benjamin, Mike PIT |
| 1 | 2 | Troy | 1 D'Amico, Jeff MIL |
| 1 | 3 | Dire Trades | 1 Spencer, Stan SD |
| 1 | 4 | New World Order | 1 Perez, Carlos LA |
| 1 | 5 | Moral Equivalents | 5 Tracy, Andy MON |
| 1 | 6 | Zenators | 1 Wright, Jamey MIL |
| 1 | 7 | Infallibles | 1 Burkett, John ATL |
| 1 | 8 | White Breads | 7 Martinez, Dave CHI |
| 1 | 9 | Mao Maos | 7 Vanderwal, John PIT |
| 1 | 10 | Homers | 5 Sojo, Luis PIT |
| 2 | 11 | Virginia Colonials | 1 Cabrera, Jose HOU |
| 2 | 12 | Troy | 6 Nieves, Jose CHI |
| 2 | 13 | Dire Trades | 2 Hernandez, Carlos SD |
| 2 | 14 | New World Order | 1 Downs, Scott CHI |
| 2 | 15 | Moral Equivalents | 7 Chen, Chin-Feng LA |
| 2 | 16 | Zenators | 6 Lugo, Julio HOU |
| 2 | 17 | Infallibles | 7 Ochoa, Alex CIN |
| 2 | 18 | White Breads | 1 Heredia, Felix CHI |
| 2 | 19 | Mao Maos | 1 Roberts, Grant NY |
| 2 | 20 | Homers | 7 Mouton, Lyle MIL |
| 3 | 21 | Virginia Colonials | 6 Cora, Alex LA |
| 3 | 22 | Troy | 7 Bautista, Danny FLA |
| 3 | 23 | Dire Trades | 1 Mota, Guillermo MON |
| 3 | 24 | New World Order | 1 Sauerbeck, Scott PIT |
| 3 | 25 | Moral Equivalents | 5 Burroughs, Sean SD |
| 3 | 26 | Zenators | 1 Snyder, John MIL |
| 3 | 27 | Infallibles | 1 Fernandez, Osvaldo CIN |
| 3 | 28 | White Breads | 1 Eaton, Adam SD |
| 3 | 29 | Mao Maos | 1 Grilli, Jason FLA |
| 3 | 30 | Homers | 1 Rodriquez, Felix SF |
| 4 | 31 | Virginia Colonials | 1 VanPoppel, Todd CHI |
| 4 | 32 | Troy | 7 Carpenter, Bubba COL |
| 4 | 33 | Dire Trades | 1 Mills, Alan LA |
| 4 | 34 | New World Order | 2 Gonzalez, Wiki SD |
| 4 | 35 | Moral Equivalents | 7 Nunez, Abraham FLA |
| 4 | 36 | Zenators | 7 Broussard, Ben CIN |
| 4 | 37 | Infallibles | 2 Bako, Paul FLA |
| 4 | 38 | White Breads | 4 Berg, Dave FLA |
| 4 | 39 | Mao Maos | 7 Brown, Roosevelt CHI |
| 4 | 40 | Homers | 1 Acevedo, Juan MIL |
| 5 | 41 | Virginia Colonials | 7 Bragg, Darren COL |
| 5 | 42 | Troy | 7 Brown, Adrian PIT |
| 5 | 43 | Dire Trades | 2 Kreuter, Chad LA |
| 5 | 44 | New World Order | 1 Almanza, Armando FLA |
| 5 | 45 | Moral Equivalents | 5 Johnson, Russ HOU |
| 5 | 46 | Zenators | 7 Tyner, Jason NY |
| 5 | 47 | Infallibles | 1 Herges, Matt LA |
| 5 | 48 | White Breads | 1 Myers, Mike CHI |
| 5 | 49 | Mao Maos | 1 Kline, Steve MON |
| 5 | 50 | Homers | 7 Dunn, Adam CIN |