
| Pilot | the time on Scully's clock: 11:21 |
| Deep Throat | Colonel Budahas's birthday: 11/21/48 |
| Fire | X-file number, spoken by Scully at the end: 11214893 |
| Miracle Man | Time of autopsy: 11:21 |
| The Erlenmeyer Flask | the time on Scully's clock: 11:21 |
| The Host | the autopsy case: #DP112148 |
| Ascension | Mulder hears Scully's message on his answer-phone at 11:23, are we to assume she was abducted at 11:21? |
| Irresistible | the time on Scully's clock: 11:21 |
| Colony | the time on Scully's motel room clock: 11:21 |
| F. Emasculata | the package containing the contaminated tissue: #DPP112148 |
| Paper Clip | Samantha Mulder's birthday: 11/21/65 |
| Piper Maru | seen as flight #1121 to Washington |
| Talitha Cumi | the time when Mulder first visits his mother at the hospital: 11:21 |
| Talitha Cumi | the time when Scully is working at her computer: 11:21 |
| Deep Throat | case file #DF101364 |
| The Host | John Doe's catalogue number: 101356 |
| End Game | seen at the top of Mulder's email: "To Dana Scully, 001013" |
| Paper Clip | Fox Mulder's birthday: 10/13/61 |
| 2Shy | used as the time when Mulder and Scully get the results of the skin test: 10:13 |
| 731 | incorporated in the combination used to unlock the train door: #101331 |
| Apocrypha | the number on the door to the silo where Krycek is eventually trapped: 1013 |
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