| Special Items (Alphabetical) | ||
| Item | Found At | Effect |
| Bike Key | Arris Dome 2300AD | Ignition key to Jet Bike in Lab 32 |
| Bent Hilt | Cursed Woods 600AD | Needed to repair Masamune |
| Bent Sword | Denorado Mts 600AD | Needed to repair Masamune |
| Chrono Trigger | Gaspar End of Time | Needed to revive Crono |
| Dreamstone | Ioka Village 65000000BC | Needed to repair Masamune |
| Epoch (Time Machine) | Keeper's Dome 2300AD | Allows you to travel to any point in time |
| Fang | Hunting Range 65000000BC | Trade for equipment |
| Feather | Hunting Range 65000000BC | Trade for equipment |
| Gate Key | Truce Canyon 600AD | Allows you to travel through time gates |
| Horn | Hunting Range 6500000BC | Trade for equipment |
| Jerky | Snail Stop 1000AD | Looks really tasty!! |
| Moon Stone | Sun Palace 2300AD | Leave in Sun Keep in 65000000BC and it turns into the Sun Stone |
| Pendant | Leene Square 1000 AD | Once charged, can open all sealed chests and doors |
| Petal | Hunting Range 65000000BC | Trade for Equipment |
| Prism Shard | Gaurdia Castle 1000AD | Proves King Gaurdia's innocence during his trial |
| Race Log | Lab 32 2300AD | Allows you to keep race times against Johnny |
| Rainbow Shell | Giants Claw 600AD | Melchior will make some pretty cool stuff with it |
| Ruby Knife | Terra Cave 12000BC | Destroys the Mammon Machine in the Ocean Palace |
| Seed | Arris Dome 23000AD | May be the futures last hope |
| Sun Stone | Sun Keep 2300AD | Lucca and Melchior can make some pretty cool stuff with it |
| Toma's Pop | Tavern 600AD | Pour it on Toma's grave in 1000AD |
| Yakra Key | Gaurdia Castle 1000AD | Unlocks the Chancellor from the locked chest |