Microarray Data and other Gene Expression Databases

Database name	Description
5'SAGE	5'-end serial analysis of gene expression
ArrayExpress	Public collection of microarray gene expression data
Axeldb	Gene expression in Xenopus laevis
BodyMap	Human and mouse gene expression data
BodyMap-Xs	A database for cross-species comparison of vertebrate gene expression
BGED	Brain gene expression database
CAGE	CAGE tags for cap-analysis of gene expression
CleanEx	Expression reference database, linking heterogeneous expression data to facilitate cross-dataset comparisons
dbERGEII	Database of experimental results on gene expression: Genomic alignment, annotation and experimental data
Deniz	Beta-thalassemia allele frequencies in world populations
EHCO	Encyclopedia of hepatocellular carcinoma genes online
EICO DB	Expression-based imprint candidate organiser: a database for discovery of novel imprinted genes
emap Atlas	Edinburgh mouse atlas: a digital atlas of mouse embryo development and spatially-mapped gene expression
EMAGE	Edinburgh mouse atlas gene expression database
EPConDB	Endocrine pancreas consortium database
EpoDB	Genes expressed during human erythropoiesis
FlyView	Drosophila development and genetics
GeneAnnot	Revised annotation of Affymetrix human gene probe sets
GeneNote	Human genes expression profiles in healthy tissues
GenePaint	Gene expression patterns in the mouse
GeneTide	A transcriptome-focused member of the GeneCards suite
GeneTrap	Expression patterns in an embryonic stem library of gene trap insertions
GENSAT	Gene expression nervous system atlas: a map of gene expression in the central nervous system of the mouse
GEO	Gene expression omnibus: Gene expression profiles
GermOnline	Gene expression in mitotic and meiotic cell cycle
GXD	Mouse gene expression database
H-ANGEL	Human anatomic gene expression library
HemBase	Genes expressed in differentiating human erythroid cells
HugeIndex	Expression levels of human genes in normal tissues
IGTC	International mouse Gene Trap Consortium data
Kidney Development Database	Kidney development and gene expression
LOLA	List of lists annotated: a comparison of gene sets identified in different microarray experiments
MAGEST	Ascidian (Halocynthia roretzi) gene expression patterns
MAMEP	Molecular anatomy of the mouse embryo project: Gene expression data on mouse embryos
MEPD	Medaka (freshwater fish Oryzias latipes) gene expression pattern database
MethDB	DNA methylation data, patterns and profiles
Mouse SAGE	SAGE libraries from various mouse tissues and cell lines
NASCarrays	Nottingham Arabidopsis Stock Centre microarray database
NetAffx	Public Affymetrix probesets and annotations
Osteo-Promoter Database	Genes in osteogenic proliferation and differentiation
PEDB	Prostate expression database: ESTs from prostate tissue and cell type-specific cDNA libraries
PEPR	Public expression profiling resource: Expression profiles in a variety of diseases and conditions
RECODE	Genes using programmed translational recoding in their expression
RefExA	Reference database for human gene expression analysis
rOGED	Rat ovarian gene expression database
SAGEmap	NCBI's resource for SAGE data from various organisms
SIEGE	Smoking Induced Epithelial Gene Expression
Stanford Microarray Database	Raw and normalized data from microarray experiments
TmaDB	Tissue microarray database
Tooth Development Database	Gene expression in dental tissue