Human Genes and Diseases       


General Databases

Database name

Description

DG-CST

Disease gene conserved sequence tags

HCAD

Human chromosome aberration database: Chromosomal breakpoints and affected genes

Homophila

Drosophila homologs of human disease genes to

OMIA

Online Mendelian inheritance in animals: A catalog of animal genetic and genomic disorders

OMIM

Online Mendelian inheritance in man: A catalog of human genetic and genomic disorders

ORFDB

Collection of ORFs that are sold by Invitrogen

PathBase

European mutant mice histopathology database: images

PYM

Compilation of protein mutant data

SOURCE

Functional genomics resource for human, mouse and rat

Human Mutations Databases

General polymorphism databases

Database name

Description

ALFRED

Allele frequencies and DNA polymorphisms

BayGenomics

Genes relevant to cardiovascular and pulmonary disease

CTGA

The catalogue for transmission genetics in Arabs

Cypriot national mutation database

Disease mutations in the Cypriot population

Database of Genomic Variants

Human genomic variants: frequency, segmental duplications and genome assembly gaps

dbQSNP

Quantification of SNP allele frequencies database

dbRIP

Human retrotransposon insertion polymorphism

dbSNP

Database of single nucleotide polymorphisms

FESD

Functional element SNPs database: SNPs located within promoters, UTRs, etc., of human genes

HGVS Databases

A compilation of human mutation databases

HGVbase

Human genome variation database: Curated human polymorphisms

HGMD

Human gene mutation database

IPD

Immuno polymorphism database

JSNP

Japanese SNP database

rSNP Guide

SNPs in regulatory gene regions

SNP Consortium database

SNP Consortium data

SNPeffect

Phenotypic effects of human coding SNPs

TopoSNP

Topographic database of non-synonymous SNPs

TPMD

Taiwan polymorphic microsatellite marker database

Cancer

Database name

Description

Atlas of Genetics and Cytogenetics in Oncology and Haematology

Cancer related genes, chromosomal abnormalities in oncology and haematology, and cancer-prone diseases

Cancer Chromosomes

Cytogenetic, clinical, and reference information on cancer-related aberrations

CGED

Cancer gene expression database

COSMIC

Catalogue of somatic mutations in cancer: Sequence data, samples and publications

Germline p53 Mutations

Mutations in human tumor and cell line p53 gene

HPTAA

Human potential tumor-associated antigens

IARC TP53 Database

Human TP53 somatic and germline mutations

ITTACA

Integrated tumor transcriptome array and clinical data analysis

MTB

Mouse tumor biology database: Tumor types, genes, classification, incidence, pathology

OncoMine

Cancer microarray data by gene or cancer type

Oral Cancer Gene Database

Cellular and molecular data for genes involved in oral cancer

RB1 Gene Mutation DB

Mutations in the human retinoblastoma (RB1) gene

RTCGD

Mouse retroviral tagged cancer gene database

SNP500Cancer

Re-sequenced SNPs from 102 reference samples

SV40 Large T-Antigen Mutants

Mutations in SV40 large tumor antigen gene

Tumor Gene Family Databases

Cellular, molecular and biological data about genes involved in various cancers

Gene-, system- or disease-specific

Database name

Description

ALPSbase

Autoimmune lymphoproliferative syndrome database

AlzGene

Candidate genes for Alzheimer disease

Androgen Receptor Gene Mutations Database

Mutations in the androgen receptor gene

BTKbase

Mutation registry for X-linked agammaglobulinemia

CarpeDB

Comprehensive database on the genetics of epilepsy

CASRDB

Calcium-sensing receptor database: CASR mutations causing hypercalcemia and/or hyperparathyroidism

Cytokine Gene Polymorphism in Human Disease

Cytokine gene polymorphism literature database

Collagen Mutation Database

Human type I and type III collagen gene mutations

ERGDB

Estrogen responsive genes database

EyeSite

Families of proteins functioning in the eye

FUNPEP

Low-complexity peptides capable of forming amyloid plaque

GOLD.db

Genomics of lipid-associated disorders database

GRAP

Mutants of G-protein coupled receptors of family A

HaemB

Factor IX gene mutations, insertions and deletions

HbVar

Human hemoglobin variants and thalassemias

HAGR

Human ageing genomic resources: Genes related to ageing in humans and model organisms

Human p53/hprt, rodent lacI/lacZ databases

Mutations at the human p53 and hprt genes; rodent transgenic lacI and lacZ mutations

Human PAX2 Allelic Variant Database

Mutations in human PAX2 gene

Human PAX6 Allelic Variant Database

Mutations in human PAX6 gene

INFEVERS

Hereditary inflammatory disorder and familial mediterranean fever mutation data

KinMutBase

Disease-causing protein kinase mutations

Lowe Syndrome Mutation Database

Mutations causing Lowe oculocerebrorenal syndrome

NCL Mutation Database

Polymorphisms in neuronal ceroid lipofuscinoses genes

PAHdb

Mutations at the phenylalanine hydroxylase locus

PGDB

Prostate and prostatic diseases gene database

PHEXdb

PHEX mutations causing X-linked hypophosphatemia

PTCH1 Mutation Database

Mutations and SNPs found in PTCH1 gene

SCAdb

Spinocerebellar ataxia candidate gene database

SynDB

Synaptic protein database

T1Dbase

A resource for type 1 diabetes research

The Autism Chromosome Rearrangement Database

Curated collection of genomic features related to autism

The Lafora Database

Mutations and polymorphisms associated with Lafora progressive myoclonus epilepsy

T-REGs

A list of TGFbeta-responsive genes