MOLECULAR MODELLING AND STRUCTURAL ANALYSIS OF PAPAIN
   
                                       
                                                                  
                 
                               Link to the GRADUATE CENTER                                      
                           
K. Bramdeo


MODEL OF PAPAIN(Carica papaya Pdb code 1CVZ)
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TABLE OF CONTENTS

Introduction
 Classification; uses; sequence; catalytic center.
Secondary Structure Helices, Beta sheets, Ramanchandran plot
Hydrophobicity of Papain Hydrophobicity plot; Hydrophobicity of helices ;
Internal view of molecule.
Papain compared to
A. thaliana protein
 Graph of Amino acid composition ;Result of best match;  Location of gene on chromosomes; gene sequence
Alignment of Papain
against A. thaliana
 Pairwise alignment; Dot Plot (Antheprot);
Superimposition of structure.
Homology Modelling
 Gene Tree, Multiple superimposition of 3D structures
Animated  Models Backbone changing to show charge and ligand, Pain stepin B complex
Graphs and Spreadsheet
 Lineweaver Burke, Michaelis Mentis and effect of increase pH of  papain