Human and other
Vertebrate Genomes 
Human and other
Vertebrate Genomes
Model organisms, comparative genomics
| Database name |
Description |
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Ascidian body atlas: digital 3D model of ascidian development |
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C. elegans, S. pombe, and human genomic information |
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Human and mouse gene, transcript and protein annotation |
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Genome databases for farm and other animals |
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Sequence variation in the chicken genome |
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Cre transgenic mouse lines with links to publications |
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A database of tunicate (Ciona) gene regulation |
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Database of evolutionary distances |
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Annotated information on eukaryotic genomes |
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Functional annotation of mouse full-length cDNA clones |
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Functional repeats in mouse cDNAs |
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Genomic alignment, annotation and experimental results |
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Automatically detected homologous genes in complete eukaryotic genomes |
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A database of eukaryotic orthologs |
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International protein index: human, mouse and rat proteins |
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Karyotype and chromosome data for animal and plant species |
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Eukaryotic orthologous groups of proteins |
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Formerly mouse genome database |
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MIPS mouse functional genomics database |
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Mouse transposon insertion database |
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Negative Proteome: A tool for comparison of complete proteomes |
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Pig EST data explorer: full-length cDNAs and ESTs |
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Comparison of phenotypes of orthologous genes in human and model organisms |
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A database of sequence polymorphisms |
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Rat genetic and genomic data |
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Rat genome tools and data |
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The adaptive evolution database: A phylogeny-based tool for comparative genomics |
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Organism-specific databases of EST and gene sequences |
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Tree families database: phylogenetic trees of animal genes |
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Unified clusters of ESTs and full-length mRNA sequences |
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Unified view of sequence tagged sites with mapping data |
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Vertebrate genome annotation: a repository for manual annotation of finished vertebrate genome sequences |
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Zebrafish information network |
Human genome databases, maps and viewers
| Database name |
Description |
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Annotated information on eukaryotic genomes |
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Complete Alu map in the human genome |
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Human chromosome 21 database |
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Human genes and genomic maps |
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Human genes, markers and phenotypes |
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Integrated database of human genes, maps, proteins and diseases |
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Gene location database |
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Gene indices of human, mouse, zebrafish, etc. |
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Mapped human BAC clones |
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Alignment of ESTs with finished human sequence |
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Human organized whole genome database |
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Human genome genetic and physical map data |
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Non-redundant human BAC end sequences |
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Segmental duplications in the human genome |
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Physical maps of human chromosome X |
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Functional annotation and prediction of LINE-1 elements |
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Display of genomic information by chromosomal position |
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Mammalian genome collection: Full-length ORFs for human, mouse, and rat genes |
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Non-redundant collection of naturally-occurring biological molecules |
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Paralogy mapping in human genomes |
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Quantitative trait loci mapping in human, mouse and rat |
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Radiation hybrid map data |
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Fluorescent images of chromosomes and cytogenetic data |
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Sequence tag alignment and consensus knowledgebase |
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Human chromosome 7 sequence and annotation |
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Tandem repeats in the human genome |
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Genome assemblies and annotation |
Human proteins
| Database name |
Description |
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Consensus CDS: collaborative effort to identify a core set of human protein coding regions |
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Full-length human cDNA clones |
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Human plasma membrane receptome: sequences, literature, and expression data |
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Human protein reference database: domain architecture, post-translational modifications, and disease association |
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Human novel transcripts: annotated full-length cDNAs |
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Human unidentified gene-encoded large (>50 kDa) protein and cDNA sequences |
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Localization, interaction and functions of human proteins |
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Databases of predicted human protein sequences |