Metabolic Enzymes and Pathways;
Signaling Pathways 
Metabolic Enzymes and Pathways;
Signaling Pathways
Enzymes and Enzyme Nomenclature
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Database name |
Description |
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Enzyme names and biochemical properties |
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Enzyme nomenclature and properties |
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IUBMB Nomenclature Committee recommendations |
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Enzyme Catalytic Mechanism Database |
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Integrated enzyme database and enzyme nomenclature |
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Mechanism, annotation and classification in enzymes: enzyme reaction mechanisms |
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Representation of target families of enzymes in PDB |
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A listing of pathway, signal transduction and protein-protein interaction databases |
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Mapping of catalytic function to domain structure |
Metabolic Pathways
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Database name |
Description |
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Integrated access to various metabolic databases |
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Metabolic and regulatory pathways in complete genomes |
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Lipid metabolites and pathways strategy |
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Metabolic pathways and enzymes from various organisms |
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Biochemical pathways, compounds and metabolism |
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University of Minnesota biocatalysis and biodegradation database |
Protein-protein Interactions
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Database name |
Description |
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3D interacting domains: Domain-domain interactions in proteins with known 3D structures |
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Affinity data for protein-ligand complexes |
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Database of domain interactions and binding |
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Database of interacting proteins: Experimentally-determined protein-protein interactions |
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Database of ribosomal crosslinks |
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Database of protein interactions in Helicobacter pylori |
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Human protein interaction database |
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Protein-protein interaction data |
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Protein-protein interactions mediated by interchain beta-sheet formation |
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Putative protein domain interactions |
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Kinetic data of bio-molecular interactions |
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Online predicted human interaction database |
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Protein-protein interactions involving PDZ domains |
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Interacting residues in protein-protein interfaces in PDB |
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Proteins interacting in nucleus (human and yeast) |
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Prediction of human protein-protein interactome |
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Interaction of proteins with known 3D structures |
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Protein signalling, transcriptional interactions and inflammation networks gateway |
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Predicted functional associations between proteins |
Signaling Pathways
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Database name |
Description |
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A system for the annotation, management, and analysis of biochemical and signalling pathway networks |
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Biomolecular interaction network database |
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Online maps of metabolic and signaling pathways |
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Genetic and physical interactions in yeast, worm and fly |
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Biomolecular relations in information transmission and expression, part of KEGG |
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A database on cell cycle regulation in eukaryotes |
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Information on endocrine networks |
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Database on gene network components |
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A database of metabolic and signaling pathways |
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Reactive oxygen species (ROS) signaling pathway |
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Signal transductions classification database |
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Gene regulatory networks and microarray analysis |