Scientific documents search:
| Scirus | Search engine for scientific documents available online. |
Bioinformatics: |
| PDB: | Protein Data Bank, where the sequence of all the proteins, which 3D structure has been solved are stored.This site provides basic tutorial on proteins. |
| NCBI tools: | National Center for Biotechnology Information(NCBI) tools for Data mining |
| Expasy: | The ExPASy (Expert Protein Analysis System) proteomics server of the Swiss Institute of Bioinformatics (SIB) is dedicated to the analysis of protein sequences and structures as well as 2-D PAGE. |
| EMBL: | Bioinformatics tools and services available at European Bioinformatics Institute. |
| Bioinformatics Links: | Bioinformatics Links |
| Bioinformatics Tutorial: | Bioinformatics Tutorial |
| Biomolecular Research Tools: | Site containing all important databases for molecular biologist. |
Molecular modelling:
| AMBER: |
[Assisted Model Building with Energy Refinement] AMBER refers to two things: a set of molecular mechanical force fields for the simulation of biomolecules (which are in the public domain, and are used in a variety of simulation programs); and a package of molecular simulation programs which includes source code and demos. |
| Visual Molecular Dynamics: | VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running MacOS-X, Unix, or Windows, is distributed free of charge, and includes source code. |
| CHARMM: | This tutorial provides a theoretical introduction to molecular dynamics simulations and practical examples using the CHARMM program. |
| Computational Biology: | An important site, containing tutorial on computational biology. |
Microarray:
| Microarray Links: | Site containing details about Microarray |
| Microarray Database: | Standford Microarray Database (SMD) stores raw and normalized data from microarray experiments, as well as their corresponding image files. In addition, SMD provides interfaces for data retrieval, analysis and visualization. Data is released to the public at the researcher's discretion or upon publication. |
| NCBI GEO: | In order to support the public use and dissemination of gene expression data, NCBI has launched the Gene Expression Omnibus. GEO is a gene expression and hybridization array data repository, as well as an online resource for the retrieval of gene expression data from any organism or artificial source. |
| EMBL Array Express: | ArrayExpress is a public repository for microarray based gene expression data. |
| Microarry Electronic Library: | The e-library, part of our Microarray Resource Center™ , is a new educational tool provided free-of-charge to microarray scientists worldwide. The e-library is a virtual repository that contains citations, abstracts, summary information, and electronic links for more than 1,650 papers, patents and books published on microarrays since the first paper appeared in Science magazine in 1995. |
Cell-signalling & Pathways:
| Biocarta: | BioCarta was founded in April 2000 to become the leading developer, supplier and distributor of uniquely sourced and characterized reagents and assays for biopharmaceutical and academic research. |
| DOQCS: | The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. |
| KEGG | Kyoto Encyclopedia of Genes and Genomes (KEGG) is an effort to computerize current knowledge of molecular and cellular biology in terms of the information pathways that consist of interacting molecules or genes and to provide links from the gene catalogs produced by genome sequencing projects. |
| Enzyme database | BRENDA is the main collection of enzyme functional data available to the scientific community. It is available free of charge for academic, non-profit users via the internet . |
| CNSBD | Cell Signaling Networks Data base (CSNDB) is a data- and knowledge- base for signaling pathways of human cells. It compiles the information on biological molecules, sequences, structures, functions, and biological reactions which transfer the cellular signals. |
Science News:
| Science daily |
| Science Now: |
| Genome News Network |
